Taxonomy
Taxonomy (from Greek ταξινομία (taxinomia) from the words taxis = order and nomos = law) may refer to either the classification of things, or the principles underlying the classification. Almost anything, animate objects, inanimate objects, places, and events, may be classified according to some taxonomic scheme.
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Taxonomies are frequently hierarchical in structure. However taxonomy may also refer to relationship schemes other than hierarchies, such as network structures. Other taxonomies may include single children with multi-parents, for example, "Car" might appear with both parents "Vehicle" and "Steel Mechanisms". A taxonomy might also be a simple organization of objects into groups, or even an alphabetical list.
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Mathematically, a hierarchical taxonomy is a tree structure of classifications for a given set of objects. At the top of this structure is a single classification, the root node, that applies to all objects. Nodes below this root are more specific classifications that apply to subsets of the total set of classified objects. So for instance in Carolus Linnaeus's Scientific classification of organisms, the root is the Organism (as this applies to all living things, it is implied rather than stated explicitly). Below this are the Domain, Kingdom, Phylum, Class, Order, Family, Genus, and Species, with various other ranks sometimes inserted.
Related Topics:
Tree structure - Carolus Linnaeus - Scientific classification - Organism - Domain - Kingdom - Phylum - Class - Order - Family - Genus - Species
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Some have argued that the human mind naturally organizes its knowledge of the world into such systems. This view is often based on the epistemology of Immanuel Kant.
Related Topics:
Epistemology - Immanuel Kant
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Anthropologists have observed that taxonomies are generally embedded in local cultural and social systems, and serve various social functions. Perhaps the most well-known and influential study of folk taxonomies is Émile Durkheim's The Elementary Forms of Religious Life. The theories of Kant and Durkheim also influenced Claude Lévi-Strauss, the founder of anthropological structuralism. Lévi-Strauss wrote two important books on taxonomies: Totemism and The Savage Mind.
Related Topics:
Anthropologists - Émile Durkheim - Claude Lévi-Strauss - Structuralism
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Such taxonomies as those analyzed by Durkheim and Lévi-Strauss are sometimes called folk taxonomies to distinguish them from scientific taxonomies that claim to be disembedded from social relations and thus objective and universal. The most well-known and widely used scientific taxonomy is Linnaean taxonomy, classical taxonomy, which classifies all living things and originated with Carolus Linnaeus. This taxonomic system is accessible from the article evolutionary tree.
Related Topics:
Folk taxonomies - Linnaean taxonomy - Carolus Linnaeus - Evolutionary tree
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A recent neologism, folksonomy, should not be confused with Folk Taxonomy (though it is obviously a contraction of the two words). Those who support scientific taxonomies have recently criticized folksonomies by dubbing them fauxonomies.
Related Topics:
Neologism - Folksonomy
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The phrase enterprise taxonomy is used in business to describe a very limited form of taxonomy used only within one organization.
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In recent decades classical taxonomy has given way substantially to molecular systematics, a branch of bioinformatics that employs the method of gene sequencing to construct phylogenetic trees. While these are valuable taxonomic tools, they have been used to produce ephemeral results that, on balance, have weakened basic classical taxonomy (Wheeler, 2004).
Related Topics:
Molecular systematics - Bioinformatics - Gene sequencing - Phylogenetic tree
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The field of solving or best-fitting of numerical equations that characterize all measurable quantities of a set of objects is called cluster analysis; this is a form of taxonomy called numerical taxonomy or taximetrics.
Related Topics:
Cluster analysis - Numerical taxonomy - Taximetrics
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| ► | References and external links |
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Latest news on taxonomy
Digital Youth Project: If you care about kids and want to understand how they use technology and why, this is a must-read
The Digital Youth Project, a MacArthur-funded three year, 22 case study, $3.3 million ethnographic study of what kids are doing online, has wound up and published its results. The project was undertaken by the eminent sociologist Mimi Ito and her talented colleagues (including the incomparable danah boyd) and is the largest and most comprehensive study of young peoples' internet use ever undertaken in the US. The conclusions are sane, compassionate, and compelling: in a nutshell, the "serious" stuff we all hope kids will do online (researching papers and so on) are only possible within a framework of "hanging out, messing around and geeking out." That is to say, all the "time-wasting" social stuff kids do online are key to their explorations and education online. Ito and her team establish a taxonomy of social activity, dividing it first into "peer-driven" and "interest-driven" -- the former being what kids do with their real-world friends, the latter being the niche interests that drive them to locate other people who are as fascinated as they are by whatever brand of esoterica they fancy. Within these two categories, the researchers break things down further into "hanging out" (undirected, social activities), "messing around" (tinkering with media, networks and technologies) and "geeking out" (delving deep into subjects based on global communities of interest) and for each one, they describe the successful and unsuccessful techniques deployed by parents and educators to direct kids' activities. All this is explained in a crisp, 55-page white paper, a snappy two-pager, and a full-length book called (appropriately), "Hanging Out, Messing Around, and Geeking Out: Kids Living and Learning with New Media." All three are available as free downloads, naturally, and the book can also be purchased as a physical object in a year when it's published. This project is the best set of research-driven recommendations and observations about young peoples' use of technology I've seen -- it's the perfect antidote to the scare stories of "internet addiction" and pedophiles stalking MySpace, and the endless refrain about "kids today." If you care about kids and want to understand how they use technology and why, this is a must-read. Two-pager, White paper, Book: Hanging Out, Messing Around, and Geeking Out (download), Digital Youth homepage...
150th Anniversary of Theory of Evolution
1858: The Linnaean Society of London listens to the reading of a composite paper on how natural selection accounts for the evolution and variety of species. The authors are Charles Darwin and Alfred Russel Wallace. Modern biology is born. Scientists of the time knew that evolution occurred. The fossil record showed evidence of life forms that no longer existed. The question was, how did it occur? Darwin had been working on his theory since 1837, soon after his epic voyage on the HMS Beagle. The hypermethodical naturalist wanted not only to classify the prodigious variation he had observed, but also to explain how it came to be. He felt he would need to publish extensive documentation of natural selection to overcome popular resistance to so radical a notion. So he planned a comprehensive, multivolume work to convince scientists and the world. Darwin was still working on his magnum opus when in June 1858 he received a letter from an English naturalist working in Malaysia. Alfred Russel Wallace was young and brash. When he conceived of natural selection, he didn't plan a 10-volume lifework. He just dashed off a quick paper on the subject and mailed it to the author of The Voyage of the Beagle, asking him to refer it for publication if it seemed good enough. Darwin was crestfallen. Was he about to lose credit for two decades of work? Wallace had suggested that Darwin forward the paper to Scottish geologist Charles Lyell. Along with English botanist Joseph Hooker, Lyell was one of a small handful of people Darwin had shown early drafts of his own work on natural selection. Darwin wrote to Lyell and Hooker, and they arranged for a joint paper to be read at the forthcoming meeting of the Linnaean Society of London. (Founded in 1788 and named for Carl Linnaeus, the Swedish scientist who devised the binomial system of taxonomy, it is the world?s oldest active biological society.) Neither Darwin nor Wallace attended the meeting. Wallace was still in Malaysia. Darwin was at home with his wife mourning the death of their 19-month-old son just three days earlier. The secretary of the society read the 18-page paper, comprising four parts: The readers' own letter of introduction explaining the extraordinary circumstances; An excerpt from Darwin's unpublished draft, part of a chapter titled, "On the Variation of Organic Beings in a State of Nature; on the Natural Means of Selection; on the Comparison of Domestic Races and True Species"; An abstract of Darwin's 1857 letter on the subject to Harvard University botanist Asa Gray; Wallace's manuscript, "On the Tendency of Varieties to Depart Indefinitely From the Original Type." The paper and the meeting did not cause an immediate sensation. Other papers were read the same day. The society had routine business to transact. The meeting was long (.pdf). But the paper was accepted for publication in the society's Proceedings later that year. Was this a remarkable case of simultaneous discovery? Not quite. It was more like simultaneous announcement. What is remarkable is that both Darwin and Wallace credited their central insight to reading Thomas Malthus' essay, Population, first published in 1798. Darwin read Malthus in 1838 and immediately realized how it applied to his own work. Wallace had read it around 1846, but first saw its import for explaining evolution while he lay recovering from fever in Malaysia a dozen years later. Malthus observed that population was held in check because not every individual would survive to reproduce. As Wallace wrote, "It suddenly flashed upon me ... in every generation the inferior would inevitably be killed off and the superior would remain -- that is, the fittest would survive." But the same differences in temperament that had led to Darwin's delay and Wallace's rush to publication now worked to Darwin's advantage ... and ultimately greater fame. Wallace was already on to his next big thing: amassing huge collections of natural specimens in hopes of winning both fame and fortune. Darwin was on to his next big thing: At the urging of his friends, he published a magnificent one-volume summary of his work, On the Origin of Species by Means of Natural Selection, or the Preservation of Favoured Races in the Struggle for Life, in 1859. That produced an intellectual and cultural splash, perhaps the largest of the 19th century. And it is the sesquicentennial of the book next year, along with the bicentennial of Darwin's birth, which will be more widely marked than the 1858 event. But our story does not end here ... quite. Both Darwin and Wallace acknowledged they did not know the precise mechanism by which the traits of the successful surviving organisms in one generation were passed on to their descendants in the next. Two years before the Darwin-Wallace paper, an obscure Austrian monk by the name of Gregor Mendel had started work on crossbreeding varieties of peas. He discovered the patterns and importance of recombinant recessive and dominant traits. Mendel read his paper, "Experiments on Plant Hybridization," in 1865, and published it the following year. But Mendel's work received little notice and was cited a mere three times over the next 35 years. Just as the significance of Malthus' observation had remained unnoticed until the time was ripe, so did Mendel's contribution. Only in 1900 -- in near-simultaneous publications by three different European botanists -- was Mendel's work rediscovered, with its apparent application as the mechanism that had eluded Darwin and Wallace. Sociologist Robert K. Merton postulated that "multiples" in science and invention are frequent, naming examples like the calculus, natural selection, the telegraph, the telephone and the automobile. He suggested that many more innovations and advances go unheralded because primacy of publication or patent deters many others from being submitted to the public. Instead, researchers will seek a new and often related line of advance. The saga of Darwin and Wallace, though, remains an extraordinary example: It involved not a simple invention or discovery but a paradigm shift, inventing the reigning paradigm that organizes modern biology -- and in some sense all modern science. The work of two scientists who worked independently was announced at precisely the same date and place, in a joint paper. It's a multiple example of "multiples," spread across the entire globe and an entire century. Ideas and concepts, even paradigms, come to fruition because of their social and historical milieu, as Merton and others have so aptly shown. If an idea arrives on the scene too far in advance, if the seeds are sown too early -- as with Malthus and Mendel -- that field may lay fallow for decades. The world of scientists is a social one of human beings whose ideas, predilections, vision and insight -- as well as their blind spots and limitations -- are the product of their cultures. If it is true, in the words of Darwin contemporary Victor Hugo, that nothing is so powerful as an idea whose time has come, then perhaps it is also true that nothing is so powerless as an idea whose time has yet to come. Source: Multiple
Linnean collection of insects online
The Linnean Society of London has posted hundreds of beautiful photos of butterflies and moths from the collections of famed naturalist Carl Linnaeus (1707-1778), the father of modern taxonomy. (Seen above, Papilio cardui.) They've also included digitized insect specimens from the collection of Sir James Edward Smith (1759-1828), the founder of the Society. These additions follow the posting of the Herbarium archive, including all 14,000 Linnaean plant specimens. From the Linnean Society: The Linnean Society is the custodian of Linnaeus' collections, which comprises specimens of plants (14,000), fish (168), shells (1,564) and insects (3,198) acquired from the widow of Carl Linnaeus in 1784 by James Edward Smith as well as Smith's own plant (17,000 specimens) and insect (5,800) collections. The collections also include the library of Linnaeus (some 1600 volumes) and around 3000 letters and manuscripts. It is the Linnean Society's aim to make available its primary research material in digital formats to support taxonomic and conservation efforts worldwide as well as providing public pleasure and enjoyment. Link to Linnean Insect Collection page, Link to press release...
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